Several potential targets have been identified within the HCV molecular structure (see Table 2 below). HCV has a protease which differs significantly from the HIV protease, but is essential during the virus life cycle. HCV also uses a helicase enzyme, which unwinds the double RNA complex as the virus copies itself. The molecular structures of these targets have been determined, and drugs to inhibit these sites are being developed. A third enzyme that is critical to HCV replication is an RNA-dependent RNA polymerase, representing another potential target for inhibition. HCV protein translation is also dependent on a unique viral region called the internal ribosomal entry site (IRES). This structure is not found in human eukaryotic cells and is homologous across all HCV genotypes, making it an excellent target for selective antivirals. Additional novel approaches, such as the development of antisense molecules, which may prevent the production of HCV proteins and degrade HCV RNA, are being pursued. However, despite aggressive research efforts, progress in the development of these new drugs is impeded by the lack of a cell or animal model that would allow rapid screening of candidate drugs. Current expectations are that some of these new drugs may be available over the next 3 to 5 years for the combination therapy of HCV infection.

Table 2. Emerging Therapies for Chronic Hepatitis C Virus Infection
Drug Class Mechanism of Action Timeline (Estimated)
Pegylated-interferon ± Ribavirin Interferon chemically bound to polyethylene glycol (PEG); allows for the slow, continuous release of interferon 1999
Helicase inhibitors Prevent unwinding of double-stranded viral RNA during HCV replication 2001-2003
Protease inhibitors Prevent cleavage of large viral protein into smaller segments 2001-2003
RNA-dependent RNA polymerase inhibitors Prevent replication or copying of the HCV genome 2001-2003
IRES (internal ribosomal entry site) inhibitors Prevent the expression of viral proteins 2001-2003
Antisense nucleotides Bind to interferon resistance sites 2008
DNA vaccines Stimulate cytotoxic T cell activity 2008
Dominant negative mutants Block viral protein production 2008