APPENDIX: Selected Section Topics
| 2.1 | Mass and Spring with Damping | 287 |
| 3.1 | van der Waals Rigidity | 288 |
| 3.3 | Drag Force on an Oscillating Sphere | 290 |
| 3.4 | Elongated Proteins and Filaments | 291 |
| 4.1 | Boltzmann's Law, law of detailed balance | 292 |
| 4.2 | Diffusion, Einstein relation, first-passage time | 294 |
| 4.3 | Fourier Analysis, power spectra | 298 |
| 5.1 | Free Energies and Conformational States | 303 |
| 5.2 | Chemical Kinetics | 307 |
| 5.3 | Diffusion-Limited Association Rate Constants | 308 |
| 6.1 |
Bending and Buckling |
312 |
| 6.3 | Thermal Bending | 317 |
| 8.1 | A Pivotal Spring | 321 |
| 9.1 | Single-stranded Polymer | 325 |
| 9.2 | Two-stranded Polymer | |
| 10.1 | Reaction-Diffusion Equation | 326 |
| 11.1 | Diffusional Length Changes at Equilibrium | 330 |
| 13.1 | Contraction and Filament Sliding | 331 |
| 15.1 | Photon Shot Noise | 333 |
| 16.1 | Crossbridge Model for Myosin | 335 |
| 16.2 | Hand-over-hand model for Dimeric Kinesin |
336
|